rs31456897 SNP Detail

Summary

• ID
  rs31456897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14949734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT ATTGAATAAA TCATATATTT
  Y
  TTTGTAAAAT ATATTAACTA GCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45536179	mCV23564597	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss134618288	ENSMUSSNP4533260	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320667952	CHEV_3_14884674	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31456897					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14949734 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	1599 bp upstream
Cpgi12992	CpG island 12992	1341 bp proximal
Rr573721	regulatory region 573721	1490 bp distal
Rr573722	regulatory region 573722	1313 bp proximal
Rr573723	regulatory region 573723	1465 bp proximal
Rr573724	regulatory region 573724	1765 bp proximal
Rr573725	regulatory region 573725	1812 bp proximal
Tssr826	transcription start site region 826	1530 bp upstream
Tssr827	transcription start site region 827	1744 bp upstream
Tssr828	transcription start site region 828	1760 bp upstream
Tssr829	transcription start site region 829	1850 bp upstream
Tssr830	transcription start site region 830	1931 bp upstream
Tssr831	transcription start site region 831	1952 bp upstream