rs31456969 SNP Detail

Summary

• ID
  rs31456969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76902602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGATCCA CTTGTGGACA
  GATAAAACAC CATCAAAGGC AGTTGCTTGG CCTAGGCCAC AGCATGTGAT GTCAGAGCTC
  AGAACTGGAG CCTGGACAGA ACTAGAATTT ACACCGGATG CCCCATAGTG CCCCACTCTG
  ACATGTTTAT CAGGGTGACC ACAGCTATCT AGACTCTACG TGATCCTTAT GGCATCACTA
  Y
  GAGCATATAC ATTTGTGTAC CAAGCTGTCT GGGAAGCACT TGGTCCCCCT GGCCTCTGCC
  CCACAGTCCC ATGGGGAGGA CATCCTATGA CCAGGACACT AAGCTGCTTC ATCCAATCCA
  AGAGCTAGGT CTGGCTGCTG AATTATCTGG CTGCTTCCTC TACAATCCCT TGAGTTTGTG
  ATGTGCTGAT GTCTTCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053865	NES12082130	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31456969					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053865	NES12082130	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76902602 () rs orientation: forward

Symbol	Name	Function Class
Mb	myoglobin	Intron
Rr504919	regulatory region 504919	275 bp proximal
Rr504920	regulatory region 504920	503 bp proximal
Tssr131857	transcription start site region 131857	745 bp downstream
Tssr131858	transcription start site region 131858	670 bp downstream
Tssr135065	transcription start site region 135065	747 bp upstream