rs31456973 SNP Detail

Summary

• ID
  rs31456973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76902950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGCTTC CTCTACAATC
  CCTTGAGTTT GTGATGTGCT GATGTCTTCA ACTCTTCTCT CGAGCTGTCC CATCCCTTTG
  TGGGGCCAAT GGAGCCTGTG TTCATGTGGT AGTCTGGTGT TCCTTCCCTG TTCCATCCCC
  ACTCTAAAAC CAGCCTGATT AGGATCCACA CTGAGGGACA GGTGGCCTCT GAGTTTTCCA
  Y
  GAGAGAGCAT GAACTGTCAC CTATAGAGTA TTCACAAAGG ACATGCATGT CCTTAAAGCA
  GTTTGCAGGG TAATTTACTG AATCCCCACA GTACACCTGA AGCAAGTTCT GTGATTGCAT
  CATGTCTCAG AGGAGGAACT AAGAGGTCTA GTGTGCATCC AGCAGAGGGA GTGTGGGAGC
  CCTGTCTCTC TGCGCACGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053869	NES12082132	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31456973					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053869	NES12082132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76902950 () rs orientation: forward

Symbol	Name	Function Class
Mb	myoglobin	Intron
Rr504919	regulatory region 504919	within coordinates
Rr504920	regulatory region 504920	155 bp proximal
Tssr131857	transcription start site region 131857	1093 bp downstream
Tssr131858	transcription start site region 131858	1018 bp downstream
Tssr135065	transcription start site region 135065	1095 bp upstream