rs31459211 SNP Detail

Summary

• ID
  rs31459211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172156079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTAAAGAA AGGCACAAGG AAAAAAACCC AAAAAGATGG
  TTTGTAACCC CACACACTTA TTTTCCATGG AAGTCAGGAG ACATGACCTG GGAACACTTC
  R
  GCAATGGCAG ATTAAGATCT TCCCCTCCCC CAACAGCAAG CAGGCTTGTT TTTCCCTCTC
  TGCAGCCCAG GATGTCCTCT GCACCTCATC TGTAAGTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45035692	mCV24595278	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss120009209	PARCsnp_1.18683	PARC_SEQ	INBRED	f	SNP		G	A
ss120012418	PARCsnp_1.08476	PARC_SEQ	INBRED	f	SNP		G	A
ss146188061	ENSMUSSNP610782	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31459211					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172156079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1557 bp distal
Gm70847	predicted gene, 70847	1586 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423530	regulatory region 423530	1652 bp distal
Rr423531	regulatory region 423531	within coordinates
Rr423532	regulatory region 423532	760 bp proximal
Tssr15213	transcription start site region 15213	749 bp downstream
Tssr15214	transcription start site region 15214	805 bp downstream