rs31459217 SNP Detail

Summary

• ID
  rs31459217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81358508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGGTGT TCAAGCCCTG
  GCTGGGAGGT CCATCTCTTT GCTCCTCAGA TAGACAGGGT GCACCCACAT CACCTTGGCA
  GGATGCAATG AGGCCAAGCA GGTGGGGTGG TGAATCGCAG CCAGTGCTCT GTGGTTAAAT
  TGGCTGTCCT CTGTGTAGAA GGCTCTGAGG GAAGAGAGAG AGGAAGGGTG GATCAAACTC
  R
  AGGTCTGGGA AGGGATGTGC TTTCTTCACC TTCTCCAAGC TACTCTAGGA AGAGGGGTGT
  GGAGAAAGTG GACTCTGCTA CTCTTCTCCT CTCCTTCAAC CCAAGGCTTC CCGGGCAGTT
  CTCTCTGATG GCTCCCTACT CCGTCTCATT TTCTCGAGTC ATCTTCACTG CACTCTCTCA
  TCATCTTGGA CTCTTCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46034588	mCV25421428	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss145163568	ENSMUSSNP6518625	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322286353	CHEV_7_88853646	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31459217					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81358508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19358	CpG island 19358	992 bp distal
Gm32579	predicted gene, 32579	within coordinates
Homer2	homer scaffolding protein 2	1835 bp upstream
Rr650185	regulatory region 650185	1962 bp distal
Rr650186	regulatory region 650186	1326 bp distal
Tssr73349	transcription start site region 73349	1891 bp upstream
Tssr73350	transcription start site region 73350	1859 bp upstream
Tssr73351	transcription start site region 73351	1796 bp upstream
Tssr73352	transcription start site region 73352	1662 bp upstream