rs31464546 SNP Detail

Summary

• ID
  rs31464546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172526488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT GCTATCTCCA GAACAGATCA
  R
  CACAGTCTAT GTTGGTGGGA CACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45035847	mCV24591836	ABI	CRAMUS_MOUSE	f	SNP		A			G		A
ss49751109	NES13026311	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		A	A	A		G	A		A
ss146199185	ENSMUSSNP1750542	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss320126984	CHEV_1_174629052	CHEVERUD	SCREENING_POP	f	SNP									A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31464546					SNP	A	A	A	A	G	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751109	NES13026311	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172526488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crp	C-reactive protein, pentraxin-related			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149			308 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1			156 bp proximal
Rr423653	regulatory region 423653			1149 bp distal
Rr423654	regulatory region 423654			856 bp distal
Tssr10246	transcription start site region 10246			858 bp downstream
Tssr10247	transcription start site region 10247			68 bp upstream
Tssr10248	transcription start site region 10248			134 bp upstream
Tssr10249	transcription start site region 10249			158 bp upstream
Tssr10250	transcription start site region 10250			213 bp upstream
Tssr10251	transcription start site region 10251			269 bp upstream
Tssr10252	transcription start site region 10252			335 bp upstream
Tssr10253	transcription start site region 10253			384 bp upstream
Tssr10254	transcription start site region 10254			449 bp upstream