rs31464842 SNP Detail

Summary

• ID
  rs31464842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45025662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGGTAT CTGTCCTTGG
  TTATATGTAA AGACTTATAA GCCTTAAGCA GCAGATTGGA GTACTATCAT TCAGCCCTCA
  ATGGGACTAC CTTCAGCCTT TCTTCAGGAC TGTGCCAGGC TGGCCCCAGC TTCCTCAGGG
  CCCACCATAC TCAAAGCTCT CCCAGCTGCC TTCCATCCAG AAATGTGTGG GTACCAACTG
  Y
  TGATGGCTGG CATCCTGCCT CTTTGCCTGC TGTTCTCTCA CTTAAAGATG CAGCCTGTTA
  TGAGAGCCAG GGCTTCCCTC TCACTTGTAA AGCAGCTACA GTGCCTGGGA GAACAGCCTC
  TACTTCAGGT TATAACACGT GCAGTATACC AAAGGGAGTT GAGCAGTAGG AAGTGGCCTT
  TTGGAAAGAC AGCAAGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46035404	mCV22694955	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C	C
ss149134191	ENSMUSSNP1244515	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31464842					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45025662 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	215 bp downstream
Tssr66520	transcription start site region 66520	932 bp upstream