rs31466466 SNP Detail

Summary

• ID
  rs31466466
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45569656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA GGAAGGGAAG CAGAGGCAGG
  K
  AGGTGGGGTC TTAGAGATGG GCTAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46035141	mCV23847852	ABI	CRAMUS_MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs31466466					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45569656 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Intron
Gm45442	predicted gene 45442	1908 bp downstream
Gm72819	predicted gene, 72819	1693 bp downstream
Rr400324	regulatory region 400324	958 bp upstream
Rr646608	regulatory region 646608	757 bp distal
Rr646609	regulatory region 646609	609 bp proximal
Rr646610	regulatory region 646610	1819 bp proximal
Tssr72489	transcription start site region 72489	873 bp upstream
Tssr72490	transcription start site region 72490	39 bp upstream
Tssr72491	transcription start site region 72491	156 bp downstream
Tssr72492	transcription start site region 72492	395 bp downstream
Tssr72493	transcription start site region 72493	419 bp downstream
Tssr72494	transcription start site region 72494	443 bp downstream
Tssr72495	transcription start site region 72495	449 bp downstream
Tssr72496	transcription start site region 72496	468 bp downstream
Tssr72497	transcription start site region 72497	598 bp downstream
Tssr72498	transcription start site region 72498	879 bp downstream
Tssr72499	transcription start site region 72499	1029 bp downstream
Tssr72500	transcription start site region 72500	1186 bp downstream