rs31468817 SNP Detail

Summary

• ID
  rs31468817
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118452989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACATCCA TCCTCAGAGA
  GGTGCCGGGA AAGCCCAGAG AAAAGGCTTT GAGCACTTGA TTCCTTGTCC ACCATCTCCC
  TGAAACCTCC AGACAGACCT ATATTCAACA GATATTTACC AAGCGCCTAC TCAAGCCAGC
  ACTGCAAGAC ACAGCTGTGA TCAAGACTTT AGCTGGCTTC CATGACATTT TTTTTTTTTT
  W
  AAAACCAGAT GAAGCAGAGA GAACATCCAA GCAGTCTTCC ACCAGATCCA ATAAATGGCA
  CAGTTAATAG TCAGCTCTTT CCTCTGGCTC ATTTGTCGAG TGTTCCTGCT CTAGGTCTAC
  AAAGGAATCC CCCTGTTCCA ACTCTTACCA TCCCAAGCTA CTTAAACAAC GTGGCAAAGA
  GAGACAAGCC CCAGCCAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46035699	mCV23653530	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31468817					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118452989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19628	CpG island 19628	1343 bp proximal
Iqck	IQ motif containing K	1986 bp upstream
Knop1	lysine rich nucleolar protein 1	within coordinates
Rr654562	regulatory region 654562	1869 bp distal
Rr654563	regulatory region 654563	1297 bp proximal
Rr654564	regulatory region 654564	1837 bp proximal
Tssr68731	transcription start site region 68731	1969 bp upstream
Tssr74457	transcription start site region 74457	1883 bp downstream