rs31469242 SNP Detail

Summary

• ID
  rs31469242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30259370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCGAGGCT CAAGACGGAG GTAATGCGCC TGCGCCGCAA
  GGAGCACTAT GGGAAGCAAA GACTCAGACA TCCCAAGGCT TTTCGGGATT TGTAGTGTTA
  K
  ATTTTAGTAT TGCCACTAAA CCTATTTCCA GCTCCTAAGT AACTATCATA GTCACTGACA
  TCCTTCACAG GAAGATCATT CTGGAGACGG ACTGGATCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46035457	mCV25394673	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss148682490	ENSMUSSNP626329	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss322135265	CHEV_7_31344964	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31469242					SNP	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30259370 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	107 bp upstream
Psenen	presenilin enhancer gamma secretase subunit	1920 bp downstream
Rr400243	regulatory region 400243	49 bp downstream
Tssr71791	transcription start site region 71791	1198 bp upstream
Tssr71792	transcription start site region 71792	1160 bp upstream
Tssr71793	transcription start site region 71793	414 bp upstream
Tssr71794	transcription start site region 71794	293 bp upstream
Tssr71795	transcription start site region 71795	103 bp upstream