rs31469921 SNP Detail

Summary

• ID
  rs31469921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75683898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAGATG TCTTAGGGTT
  TCTATTGCTG CAACAAAACA CCATGACCAA AAAGCATGTT GGAGAGAAAA GGATGGCTCA
  CACTTCCATA TTGTTGTTAA TTATTGAAGG AGGTCAGGAC AGGAACTCAA ACTTAGCAGG
  AACCTGGAGG CAGGAGCTGG TGCAGAGGCT ATGGAGGGGG GCTGCTGACT GGCTCACTTC
  Y
  ATGGCTTGCT CAGCCTGGTT TCTTATAGAA CCCAGGACCA CCAGCCCAGG GCTGGCCCTA
  TCCACCATAG GCTGGGACTA ATCACTAATT GAGAAAATGC CCTACAGCTG GGTCTCATGG
  AGGCATTTCC TCAACTGAGG CTCCTTCCTC TCTGATGACT CTAGCTTGTG TCAAGTTGAC
  CCACAAAACT ACCCAGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49243297	NES12530796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31469921					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49243297	NES12530796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75683898 () rs orientation: forward

Symbol	Name	Function Class
Rr369875	regulatory region 369875	573 bp downstream
Tssr126680	transcription start site region 126680	209 bp upstream