rs31469999 SNP Detail

Summary

• ID
  rs31469999
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT CCCAAATAAA GCTGTTTGAG
  K
  AGAGAACCTG GTATCTCAAG CAATC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45036993	mCV24779712	ABI	CRAMUS_MOUSE	f	SNP		T	G					G	T
ss60822425	NES16493738	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		T	T	G	T	G	G	G
ss145737843	ENSMUSSNP981685	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31469999					SNP	T	T	G	G	G	G	G	G	T	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822425	NES16493738	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1418 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr28719	regulatory region 28719	502 bp proximal
Tssr14250	transcription start site region 14250	1659 bp downstream
Tssr14251	transcription start site region 14251	1719 bp downstream
Tssr14252	transcription start site region 14252	1750 bp downstream
Tssr14253	transcription start site region 14253	1773 bp downstream
Tssr14254	transcription start site region 14254	1790 bp downstream