rs31470000 SNP Detail

Summary

• ID
  rs31470000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73970559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATACATA CATACATAAA ATATTAAAGA CATGGTGGTA
  GAGAAGGAAG TGAAGAGACC CCTTGACCAC CAGATCTAGA GCTAGCATTA GTATTGGGGC
  R
  CTTGCACCCC CTCTACGGCC CCAAATACCT CTGCCTCATG GTGAGATTTC TGCCTTCACT
  GGGTACCTCA CTCATCCTTA GATTCTCAGT CCCTAACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45036994	mCV22554866	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss144680554	ENSMUSSNP5979432	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31470000					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73970559 () rs orientation: forward

Symbol	Name	Function Class
Rr34544	regulatory region 34544	within coordinates
Rr371521	regulatory region 371521	905 bp upstream
Tns1	tensin 1	within coordinates
Tssr12218	transcription start site region 12218	669 bp upstream
Tssr12219	transcription start site region 12219	605 bp upstream
Tssr12220	transcription start site region 12220	572 bp upstream