rs31471182 SNP Detail

Summary

• ID
  rs31471182
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78635298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTCTCTTTGC
  AAGATTTGCT AGAAATCCGT GTTCAAACTA GGATAACGAA CCCAGTCCTG AGAAGAATGG
  GGAAAAAAAA AAACAAGCAG GTTATTTCTT CGTTTATATT GAGATTTATG CATCGCAGCA
  GTGAAGGCGG GTTTTGCAGT TCTCAGCGGG GGCACCCTGG ACGCCTCAGG TCTTCCCGCC
  S
  TGCGCCCCCT GCCCAGCTCC CCTCTGCAGC TGCTGTAGCT GCGGGTCCGT CCCGCCGCTC
  CCCTCCCCAA GGGCTCAATC CCCGCCCTGC GAGGGCCCCA GTCGGGTCCA GCCGTCGGCG
  GCTCCGCAGA ATGACCCATA GTAACCTCGC CCCGCCCCTG CCGCCAGCAC CGCGCTCCCC
  AGGCCGGCAT TTGATAGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45036428	mCV22632343	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss144751887	ENSMUSSNP6295528	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31471182					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78635298 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	302 bp upstream
Cpgi461	CpG island 461	within coordinates
Rr17618	regulatory region 17618	698 bp distal
Rr29694	regulatory region 29694	within coordinates
Rr371565	regulatory region 371565	1881 bp downstream
Rr396121	regulatory region 396121	116 bp upstream
Tssr7581	transcription start site region 7581	275 bp upstream
Tssr7582	transcription start site region 7582	293 bp upstream
Tssr12428	transcription start site region 12428	692 bp downstream
Tssr12429	transcription start site region 12429	709 bp downstream
Utp14b	UTP14B small subunit processome component	302 bp upstream