rs31471245 SNP Detail

Summary

• ID
  rs31471245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94944124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCATAGCCT GTGCTATCAA CCAAAGGGCA GTCACCTGCA ACCCAACATG GGAGCACCAC
  CCACCTTCAC AGCCCCACTG TGTCCCACGT ACTTGGCCAG TGTGATCAGG CCCACGTTAT
  TCTCAGGGTT GCTTCGGGTC TTTGAGTGAC ATACAATGTT GACGGCATCC TGCTGGGCCT
  GCAGCCGGGT GGGAAGGAAG TCTCCGTTCC GCATGTACTC ACTGTTGTCC ACACTGTCAG
  ATAAGGAGAA AAGGACACTG GAGGATGCCC TGAAACATCC TCTATAATGG AGGACCCCTT
  Y
  TACACCTCCT GCCAGACACA CGTGGTACAG CGGTGGCTCT CAGGCTTCTT GGAACACAGT
  GGTGGCACAT GCCTTTAATC CCAGCACTTG GGAGGCAGAG ACAGATGGAT TTCTGAGTTC
  CAAGGCCAGC CTGGTCTACA GAATGAATTC CAGGACAGCC AGGGCTAAAC AGAGAAACTG
  TCTCGAAAAA AAAAAAAAAA AAACCAAAAA ACAAAACAAA AAAAGATTTA TTTTATATAT
  GTGAGTACAC TATTGCTCTC TTCAGACACA CCAGAAGAGG GCATCAGATC CCATTACAGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45536608	mCV24557757	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135509609	ENSMUSSNP5170643	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31471245					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94944124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65650	predicted gene, 65650			1387 bp downstream
Psmd4	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4			Intron
				Noncoding-Transcript-Variant
Rr580795	regulatory region 580795			267 bp proximal