rs31471559 SNP Detail

Summary

• ID
  rs31471559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30827497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGCAACT TGGGGGGGGG GGAGTGAGTC CTATATGTTT
  AACTTTGGAG ACAGGATCTC ACTATGTAGA CCATGCTGAC TTCTAACTGG TGGTCTCCTG
  Y
  TTCAGTATGT ACCACCACAC CACGTTCGTA TTCTTTTATA TGATTTGTCT GTTTGTTGTG
  TGTACCTCAC CCCCTGGGTG AGGGCACTGA CCTGTGTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46035477	mCV24561306	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148700243	ENSMUSSNP6874656	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322139535	CHEV_7_31913091	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31471559					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30827497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18837	CpG island 18837	427 bp distal
Rr645025	regulatory region 645025	1239 bp distal
Rr645026	regulatory region 645026	579 bp distal
Rr645027	regulatory region 645027	422 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	1069 bp upstream
Tssr71935	transcription start site region 71935	1347 bp upstream
Tssr71936	transcription start site region 71936	1300 bp upstream
Tssr71937	transcription start site region 71937	1138 bp upstream
Tssr71938	transcription start site region 71938	1080 bp upstream
Tssr71939	transcription start site region 71939	1030 bp upstream
Tssr71940	transcription start site region 71940	895 bp upstream