rs31471842 SNP Detail

Summary

• ID
  rs31471842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191570284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAA GAACAGGAGA CTGGATTTAC
  Y
  AATGTGGGGA GCACTGGGGG TTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45035975	mCV23985453	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146511007	ENSMUSSNP57347	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320196171	CHEV_1_193662051	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31471842					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191570284 () rs orientation: forward

Symbol	Name	Function Class
Rr426234	regulatory region 426234	142 bp distal
Rr426235	regulatory region 426235	657 bp proximal
Rr426236	regulatory region 426236	1851 bp proximal