rs3147187 SNP Detail

Summary

• ID
  rs3147187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83468543 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGACC AGGGCTCAAC ACAGAGAGGT
  Y
  CTGTGAAATA AAAGAATGTA TTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132470760	ENSMUSSNP3977251	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A	A
ss323767488	CHEV_11_83391219	CHEVERUD	SCREENING_POP	r	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3147187					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83468543 () rs orientation: reverse

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	909 bp proximal
Rr452991	regulatory region 452991	1288 bp proximal
Rr452992	regulatory region 452992	1502 bp proximal
Tssr109694	transcription start site region 109694	1807 bp upstream
Tssr109695	transcription start site region 109695	1759 bp upstream
Tssr109696	transcription start site region 109696	763 bp upstream
Tssr109697	transcription start site region 109697	570 bp upstream
Tssr109698	transcription start site region 109698	703 bp downstream
Tssr109699	transcription start site region 109699	750 bp downstream
Tssr109700	transcription start site region 109700	779 bp downstream
Tssr109701	transcription start site region 109701	812 bp downstream
Tssr109702	transcription start site region 109702	869 bp downstream
Tssr109703	transcription start site region 109703	879 bp downstream
Tssr109704	transcription start site region 109704	903 bp downstream