rs3147188 SNP Detail

Summary

• ID
  rs3147188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83468178 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTTA GCCCCTCCCT GTGGTCAGGA
  Y
  TTTAAGTATG CCAGAATACC ATAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38789123	mCV24634363	ABI	CRAMUS_MOUSE	r	SNP	G	G	G	A	G
ss132470756	ENSMUSSNP1720972	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	G		G
ss323767487	CHEV_11_83390854	CHEVERUD	SCREENING_POP	r	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3147188					SNP	C	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83468178 () rs orientation: reverse

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	1274 bp proximal
Rr452991	regulatory region 452991	1653 bp proximal
Rr452992	regulatory region 452992	1867 bp proximal
Tssr103716	transcription start site region 103716	1986 bp downstream
Tssr109692	transcription start site region 109692	1986 bp upstream
Tssr109693	transcription start site region 109693	1869 bp upstream
Tssr109694	transcription start site region 109694	1442 bp upstream
Tssr109695	transcription start site region 109695	1394 bp upstream
Tssr109696	transcription start site region 109696	398 bp upstream
Tssr109697	transcription start site region 109697	205 bp upstream
Tssr109698	transcription start site region 109698	1068 bp downstream
Tssr109699	transcription start site region 109699	1115 bp downstream
Tssr109700	transcription start site region 109700	1144 bp downstream
Tssr109701	transcription start site region 109701	1177 bp downstream
Tssr109702	transcription start site region 109702	1234 bp downstream
Tssr109703	transcription start site region 109703	1244 bp downstream
Tssr109704	transcription start site region 109704	1268 bp downstream