rs3147190 SNP Detail

Summary

• ID
  rs3147190
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83465691 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTCC ACTCGGTTTC CCAGCGGATT
  W
  TAAGTGGATA AACTGTGAGA GTGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37141434	NES08462407	PERLEGEN	MM_PANEL2	r	SNP	T		T	T	A	T	T		T	A	A		T	A	T		T
ss38773951	mCV24634354	ABI	CRAMUS_MOUSE	r	SNP		T	T					A
ss132470752	ENSMUSSNP3456211	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	T						T
ss323767486	CHEV_11_83388367	CHEVERUD	SCREENING_POP	r	SNP												T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3147190					SNP	A	A	A	A	T	A	A	T	A	T	T	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141434	NES08462407	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83465691 () rs orientation: reverse

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	185 bp downstream
Tssr103715	transcription start site region 103715	135 bp downstream
Tssr103716	transcription start site region 103716	485 bp upstream
Tssr109677	transcription start site region 109677	1181 bp upstream
Tssr109678	transcription start site region 109678	800 bp upstream
Tssr109679	transcription start site region 109679	516 bp upstream
Tssr109680	transcription start site region 109680	265 bp upstream
Tssr109681	transcription start site region 109681	146 bp upstream
Tssr109682	transcription start site region 109682	115 bp downstream
Tssr109683	transcription start site region 109683	166 bp downstream
Tssr109684	transcription start site region 109684	192 bp downstream
Tssr109685	transcription start site region 109685	237 bp downstream
Tssr109686	transcription start site region 109686	300 bp downstream
Tssr109687	transcription start site region 109687	349 bp downstream
Tssr109688	transcription start site region 109688	396 bp downstream
Tssr109689	transcription start site region 109689	439 bp downstream
Tssr109690	transcription start site region 109690	452 bp downstream
Tssr109691	transcription start site region 109691	462 bp downstream
Tssr109692	transcription start site region 109692	493 bp downstream
Tssr109693	transcription start site region 109693	604 bp downstream
Tssr109694	transcription start site region 109694	998 bp downstream
Tssr109695	transcription start site region 109695	1048 bp downstream