rs3147191 SNP Detail

Summary

• ID
  rs3147191
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83465309 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGAT ATCATGGTAC AATTTTTTTT
  W
  AATTTTTTGT TTGTTTGTTT TTGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132470744	ENSMUSSNP1093465	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	T	T
ss323767484	CHEV_11_83387985	CHEVERUD	SCREENING_POP	r	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3147191					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83465309 () rs orientation: reverse

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452989	regulatory region 452989	1832 bp distal
Tssr103714	transcription start site region 103714	164 bp upstream
Tssr103715	transcription start site region 103715	205 bp upstream
Tssr103716	transcription start site region 103716	867 bp upstream
Tssr109677	transcription start site region 109677	799 bp upstream
Tssr109678	transcription start site region 109678	418 bp upstream
Tssr109679	transcription start site region 109679	134 bp upstream
Tssr109680	transcription start site region 109680	106 bp downstream
Tssr109681	transcription start site region 109681	228 bp downstream
Tssr109682	transcription start site region 109682	497 bp downstream
Tssr109683	transcription start site region 109683	548 bp downstream
Tssr109684	transcription start site region 109684	574 bp downstream
Tssr109685	transcription start site region 109685	619 bp downstream
Tssr109686	transcription start site region 109686	682 bp downstream
Tssr109687	transcription start site region 109687	731 bp downstream
Tssr109688	transcription start site region 109688	778 bp downstream
Tssr109689	transcription start site region 109689	821 bp downstream
Tssr109690	transcription start site region 109690	834 bp downstream
Tssr109691	transcription start site region 109691	844 bp downstream
Tssr109692	transcription start site region 109692	875 bp downstream
Tssr109693	transcription start site region 109693	986 bp downstream
Tssr109694	transcription start site region 109694	1380 bp downstream
Tssr109695	transcription start site region 109695	1430 bp downstream