rs31472252 SNP Detail

Summary

• ID
  rs31472252
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180549408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTGTAC GTGTTCTCTA
  GGCCTTTTAG GAAACGTGGT GTTGTTCCTT TGGCCACATA CATGCAAATC TACAAGAAGG
  GTGATATTGT AGACATCAAT GGGCACTGTT CAAAAAGGAA TGTCCCATAA GTGCTACCAC
  AGCAAAACCA GAAGAGTCTA CAATGTCACC CAGCATGCCG TGGGCATCAT TGCAAACAAG
  S
  AGGTTAAGGA CAAAATTCTG GCCAAGAGGA TCAATGTGCG GATTGAGCAC ATCAAGCACT
  CAAAGAGCAG GGACAGCTTC CTGAAGCGGG TGAAGGAGAA TGATCAGAAG AAAAAGGAAG
  CCAAAGAGAA GGGCACCTGG GTGCAGCTGA AGCGCCAGCC TGCGCCACCC AGAGAAGCAC
  ACTTTGTGAG GACTAACAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45036728	mCV24576676	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss146385491	ENSMUSSNP6071659	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31472252					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180549408 () rs orientation: forward

Symbol	Name	Function Class
Gm8101	predicted gene 8101	within coordinates
Gm70653	predicted gene, 70653	1599 bp downstream
Rr424550	regulatory region 424550	1100 bp distal
Rr424551	regulatory region 424551	1300 bp distal
Rr424552	regulatory region 424552	606 bp proximal