rs31472300 SNP Detail

Summary

• ID
  rs31472300
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135304059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA TGTGATTCCC CTGCCCATTA
  S
  TGCCTTGGCT CCTAGTTGCT CCTGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45036345	mCV23630690	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss145532367	ENSMUSSNP4285134	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31472300					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135304059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	845 bp distal
Rr12587	regulatory region 12587	659 bp distal
Rr28596	regulatory region 28596	658 bp distal
Rr30685	regulatory region 30685	1742 bp proximal
Shisa4	shisa family member 4	1084 bp upstream
Tssr13847	transcription start site region 13847	1887 bp upstream
Tssr13848	transcription start site region 13848	1388 bp upstream
Tssr13849	transcription start site region 13849	1375 bp upstream
Tssr13850	transcription start site region 13850	1223 bp upstream
Tssr13851	transcription start site region 13851	1211 bp upstream
Tssr13852	transcription start site region 13852	1093 bp upstream
Tssr13853	transcription start site region 13853	1076 bp upstream
Tssr13854	transcription start site region 13854	1057 bp upstream
Tssr13855	transcription start site region 13855	1044 bp upstream
Tssr13856	transcription start site region 13856	1036 bp upstream