rs31473085 SNP Detail

Summary

• ID
  rs31473085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103874917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG TCGTTTCACA GTATGGATAA
  Y
  TTTCATTTGA TGCTGTTTTA ATGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45536633	mCV25363877	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135565684	ENSMUSSNP4185587	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320859273	CHEV_3_103771524	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31473085					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103874917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13642	CpG island 13642	320 bp proximal
Phtf1	putative homeodomain transcription factor 1	509 bp upstream
Phtf1os	putative homeodomain transcription factor 1, opposite strand	within coordinates
Rr582453	regulatory region 582453	19 bp proximal
Rr582454	regulatory region 582454	856 bp proximal
Rr582455	regulatory region 582455	1033 bp proximal
Rr582456	regulatory region 582456	1122 bp proximal
Rr582457	regulatory region 582457	1199 bp proximal
Rsbn1	rosbin, round spermatid basic protein 1	965 bp downstream
Tssr31039	transcription start site region 31039	344 bp upstream
Tssr31040	transcription start site region 31040	726 bp upstream
Tssr31041	transcription start site region 31041	1028 bp upstream
Tssr34872	transcription start site region 34872	677 bp downstream