rs31473166 SNP Detail

Summary

• ID
  rs31473166
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115217849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGAGGA AGAGGTGTGG
  ACAAGGTCTG AGAGCTTCCT GAGCTCACTT GCAGCTTTTG CCTGTGTGTG GCCTGTGACA
  TCTGGAATCC TACTGTTCTG CAAAGACGGG CTAAAAGAGT GGTGTGACTT GAGTGCTGCC
  TATCTCAGAA AACACAATGA GGTATCTATC AAATATTTTT CTGGGATCTG CCCATTTCTC
  S
  TCAGTTACGT GACCTTCCTC CTGAAATATG CTCTAACCCA CCCCATCCCC ACTTCCTGTC
  ATAATTTGGT TCTCTCATAG CTACACAGGG TGATGCTGCT GGAATCAGCT TTAACTGAGT
  GATTTAATGA TGTAACCCTG TGACAAACCA TCTCATTTGT CTACACAATG TAATTAATCC
  TATATATGCC ATTACTTTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056126	NES11884913	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31473166					SNP	C	C	C	G	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056126	NES11884913	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115217849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit366	DNA segment, Chr 6, Massachusetts Institute of Technology 366			1965 bp proximal
Rr636939	regulatory region 636939			1735 bp distal
Rr636940	regulatory region 636940			within coordinates
Rr636941	regulatory region 636941			328 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			1910 bp downstream