rs31473168 SNP Detail

Summary

• ID
  rs31473168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115218099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT GAGACCTCCC AAACAAAATG
  R
  TCCAGTGCTT CTTTTCCTAA ACTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056128	NES11884914	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	G	A	G	G		A	A	G	A
ss133572404	ENSMUSSNP4483843	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31473168					SNP	A	A	A	A	G	G	A	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056128	NES11884914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115218099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit366	DNA segment, Chr 6, Massachusetts Institute of Technology 366			1715 bp proximal
Rr636939	regulatory region 636939			1985 bp distal
Rr636940	regulatory region 636940			172 bp distal
Rr636941	regulatory region 636941			78 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant