rs31474054 SNP Detail

Summary

• ID
  rs31474054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115219619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTATGGC CTCCATACCA
  CACGTGCTCT GAGGCTTCAG CCGCAGTCTC CTCACATGCA AAATGGGAGA CCTGGTGTGG
  ACTCTATCTG GTCTCTTTCA TCATTAATTT GATGATGACT GAGTACTAAA GGAAGTCTTA
  GAACCCTAAG GTTATTAGTT CTATATTACT GAAGGCTGTA GCACCCAAAG GCCCATGTTT
  Y
  CCTGCATTTT AATAGAATCT TTACCAAAAA CTGACCGTGA TTTGATGTTT AGGGGGAAAT
  ACAATAAATG ATGTTCTTTC TGATGCACAG TGTGGGAAGC AGATGGAACT GACCCTTCTC
  TGCTCATATC TAAAGGGAGT CTGGAAAGGA TGGGCCTTTT GTCCAAAGGC TACTGTTGAG
  TTAAGGCTCA CCAGAAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056134	NES11884917	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31474054					SNP	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056134	NES11884917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115219619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit366	DNA segment, Chr 6, Massachusetts Institute of Technology 366			195 bp proximal
Rr636940	regulatory region 636940			1692 bp distal
Rr636941	regulatory region 636941			1155 bp distal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Timp4	tissue inhibitor of metalloproteinase 4			mRNA-UTR
Tssr58296	transcription start site region 58296			1525 bp upstream