rs31474056 SNP Detail

Summary

• ID
  rs31474056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115219918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATGGAA CTGACCCTTC
  TCTGCTCATA TCTAAAGGGA GTCTGGAAAG GATGGGCCTT TTGTCCAAAG GCTACTGTTG
  AGTTAAGGCT CACCAGAAGG CTCTGGTTTG CTAATAACCC TCAGGCTTAG CACACACACA
  CACACACACA CACACACACA CACACACACA CACACACTAA TACCCTTACA GATAATGGGA
  Y
  CTAAACTTTG TAAAAAGGTC CTAGCTTTCC TGTCCCTGAT GAGTGGAGGA CAGGTTTGAT
  CCAACATTGT TCCCTTGTAG CTGACCAGGC TATTAGTGGT TTAGAACCTG AACTGATGCC
  ACTAGAGAAA AGATGCTAGA TTTCCCCTGC TGCCCATGCA CTGAGCTTGG CATTGTGGGA
  TGGAGGTGGA CTGACTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48056136	NES11884918	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31474056					SNP	C	C	C	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056136	NES11884918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115219918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit366	DNA segment, Chr 6, Massachusetts Institute of Technology 366			within coordinates
Rr636940	regulatory region 636940			1991 bp distal
Rr636941	regulatory region 636941			1454 bp distal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Timp4	tissue inhibitor of metalloproteinase 4			mRNA-UTR
Tssr58296	transcription start site region 58296			1226 bp upstream