rs31474980 SNP Detail

Summary

• ID
  rs31474980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115221256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTCATTGA GCAGACATAC TACCCCAATC ACCGAGAGAT
  GGTAGGTGGC TAAGTGGAGC TTTGACTCTG CTGTTTCTAC CTTAGCCACA TGGTGACTCT
  R
  GAGGTCTGGC AAGAGCCTCA GCACCTCAGG CCCAACATGT CAGGTAGCTG TGGAGCTGCT
  TAGAGGAGCC AACGGAGCTA GATTCTAGCC AACAGCTTTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48056150	NES11884898	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31474980					SNP	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48056150	NES11884898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115221256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit366	DNA segment, Chr 6, Massachusetts Institute of Technology 366			1318 bp distal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Timp4	tissue inhibitor of metalloproteinase 4			mRNA-UTR
Tssr58296	transcription start site region 58296			107 bp downstream