rs3147517 SNP Detail

Summary

• ID
  rs3147517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89019913 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTCTT GGCCCCTCCA CTACAGATGG
  R
  TTGGATGCAT CTTTTCCTCT GCAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45954683	mCV23950278	ABI	CRAMUS_MOUSE	r	SNP	C	C	T
ss133368832	ENSMUSSNP412038	ENSEMBL	ENSEMBL_Sanger	r	SNP	C		T
ss321851119	CHEV_6_88992925	CHEVERUD	SCREENING_POP	r	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3147517					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89019913 () rs orientation: reverse

Symbol	Name	Function Class
D6Mit248	DNA segment, Chr 6, Massachusetts Institute of Technology 248	737 bp proximal
Gm66902	predicted gene, 66902	within coordinates
Rr634071	regulatory region 634071	within coordinates