rs31475780 SNP Detail

Summary

• ID
  rs31475780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26836895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAC GCCGAGGTAA GAGCAACTGG
  R
  ACATCGCGTC GCGTGACCCT CCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39293261	mCV22747353	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss139210897	ENSMUSSNP1030219	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324569424	CHEV_14_27928124	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31475780					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26836895 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	within coordinates
Cpgi6253	CpG island 6253	within coordinates
Rr287891	regulatory region 287891	895 bp distal
Rr296929	regulatory region 296929	within coordinates
Tssr124726	transcription start site region 124726	44 bp downstream
Tssr124727	transcription start site region 124727	29 bp downstream
Tssr124728	transcription start site region 124728	220 bp upstream