rs31475825 SNP Detail

Summary

• ID
  rs31475825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30915682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA TTAAAGGTAT GCGCCACCAC
  R
  GGCCAAACCC AGCAGTTTTA ACTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45037912	mCV24836511	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss148848326	ENSMUSSNP3762887	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss319676663	CHEV_1_30933446	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31475825					SNP	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30915682 () rs orientation: forward

Symbol	Name	Function Class
Gm70275	predicted gene, 70275	within coordinates
Rr371054	regulatory region 371054	within coordinates
Rr408758	regulatory region 408758	1592 bp distal
Rr408759	regulatory region 408759	1469 bp distal
Tssr6136	transcription start site region 6136	1561 bp downstream
Tssr11169	transcription start site region 11169	678 bp upstream