rs31477496 SNP Detail

Summary

• ID
  rs31477496
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153425442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGC CGCGCTCACC TAGGCTGCTG
  K
  GCACTGGAGA CGCGATCTCC TCTGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss45038099	mCV23521076	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T	G
ss60820870	NES16434133	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		G	G	T	T	T
ss145744840	ENSMUSSNP846659	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs31477496					SNP	T	T	T	T	T	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60820870	NES16434133	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153425442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	within coordinates
F630010C12Rik	RIKEN cDNA F630010C12 gene	within coordinates
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr420696	regulatory region 420696	1720 bp distal
Rr420697	regulatory region 420697	within coordinates
Rr420698	regulatory region 420698	339 bp proximal
Rr420699	regulatory region 420699	1195 bp proximal
Rr420700	regulatory region 420700	1281 bp proximal
Tssr14276	transcription start site region 14276	1 bp downstream
Tssr14277	transcription start site region 14277	38 bp downstream
Tssr14278	transcription start site region 14278	122 bp downstream
Tssr14279	transcription start site region 14279	142 bp downstream
Tssr14280	transcription start site region 14280	349 bp downstream