rs31477593 SNP Detail

Summary

• ID
  rs31477593
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9616378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCTCGCGCGC ACAAGATGCA GATGCCCAGC TCAGCCGGCC TGCACCCTAC
  K
  GGACACCAGA GTAAGGAAGA GCTGGGCCGC GCCATGCAAG TGGCCAAGGT           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
ss45037743	mCV24092603	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss148565711	ENSMUSSNP1998086	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
rs31477593					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9616378 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	1795 bp upstream
Cpgi23	CpG island 23	within coordinates
Rr395961	regulatory region 395961	757 bp downstream
Rr407596	regulatory region 407596	955 bp distal
Rr407597	regulatory region 407597	735 bp distal
Rr407598	regulatory region 407598	799 bp distal
Rr407599	regulatory region 407599	571 bp distal
Rr407600	regulatory region 407600	within coordinates
Rr407601	regulatory region 407601	within coordinates
Rr407602	regulatory region 407602	1368 bp proximal
Rr407603	regulatory region 407603	1806 bp proximal
Rrs1	ribosome biogenesis regulator 1	Coding-Synonymous
Tssr5894	transcription start site region 5894	765 bp downstream
Tssr5895	transcription start site region 5895	674 bp downstream
Tssr5896	transcription start site region 5896	658 bp downstream
Tssr5897	transcription start site region 5897	165 bp downstream
Tssr5898	transcription start site region 5898	1896 bp upstream
Tssr5899	transcription start site region 5899	1961 bp upstream