rs3147809 SNP Detail

Summary

• ID
  rs3147809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT ACATGAATCT GCCCTTCCCC
  Y
  TACTCTCTCC TCTCTCTCTC TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322134110	CHEV_7_31206269	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs3147809					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	167 bp proximal
Cpgi18800	CpG island 18800	1844 bp proximal
Hcst	hematopoietic cell signal transducer	1396 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	482 bp upstream
Rr368301	regulatory region 368301	1308 bp downstream
Rr400239	regulatory region 400239	303 bp upstream
Rr400240	regulatory region 400240	882 bp upstream
Rr644812	regulatory region 644812	1578 bp distal
Rr644813	regulatory region 644813	906 bp distal
Rr644814	regulatory region 644814	within coordinates
Rr644815	regulatory region 644815	666 bp proximal
Rr644816	regulatory region 644816	1535 bp proximal
Tssr65711	transcription start site region 65711	1585 bp downstream
Tssr65712	transcription start site region 65712	1558 bp downstream
Tssr65713	transcription start site region 65713	1301 bp downstream
Tssr65714	transcription start site region 65714	474 bp upstream
Tssr65715	transcription start site region 65715	1022 bp upstream
Tssr65716	transcription start site region 65716	1139 bp upstream
Tssr65717	transcription start site region 65717	1183 bp upstream
Tssr65718	transcription start site region 65718	1211 bp upstream
Tssr71741	transcription start site region 71741	1474 bp upstream
Tssr71742	transcription start site region 71742	1378 bp upstream
Tssr71743	transcription start site region 71743	888 bp upstream
Tssr71744	transcription start site region 71744	877 bp upstream
Tssr71745	transcription start site region 71745	358 bp downstream