rs31478165 SNP Detail

Summary

• ID
  rs31478165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176541298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA TAAAGGAGGG TGATTGAGAG
  R
  CTCATGCAGA TATGTTCTAA AATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45038108	mCV25116231	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss146339992	ENSMUSSNP45784	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320157474	CHEV_1_178643863	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31478165					SNP	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176541298 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	866 bp downstream
Rr423899	regulatory region 423899	849 bp distal
Rr423900	regulatory region 423900	1135 bp distal