rs3147846 SNP Detail

Summary

• ID
  rs3147846
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123107 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTTA TTCTTACCTG GCTCTGCCTC
  D
  TTCACAGATG GAGTCAGTGG CTGGA                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss12758480	IKBns_JC7152_15	ROCHEBIO	RPAMM	f	SNP	G	G	T	A	G	G	A	A	G	G			G
ss46004889	mCV22814518	ABI	CRAMUS_MOUSE	r	SNP		C						T		C
ss148677578	ENSMUSSNP3516553	ENSEMBL	ENSEMBL_Sanger	r	SNP		C								C
ss322134129	CHEV_7_31208701	CHEVERUD	SCREENING_POP	r	SNP											C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs3147846					SNP	G	G	T	A	G	G	A	A	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123107 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	874 bp distal
Cpgi18800	CpG island 18800	150 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1828 bp downstream
Rr400240	regulatory region 400240	1249 bp downstream
Rr644814	regulatory region 644814	1940 bp distal
Rr644815	regulatory region 644815	1266 bp distal
Rr644816	regulatory region 644816	397 bp distal
Tssr2184	transcription start site region 2184	334 bp downstream
Tssr65714	transcription start site region 65714	1940 bp downstream
Tssr65715	transcription start site region 65715	1387 bp downstream
Tssr65716	transcription start site region 65716	1251 bp downstream
Tssr65717	transcription start site region 65717	1238 bp downstream
Tssr65718	transcription start site region 65718	1212 bp downstream
Tssr65719	transcription start site region 65719	389 bp downstream
Tssr65720	transcription start site region 65720	368 bp downstream
Tssr65721	transcription start site region 65721	311 bp downstream
Tssr65722	transcription start site region 65722	274 bp downstream
Tssr65723	transcription start site region 65723	259 bp downstream
Tssr65724	transcription start site region 65724	205 bp downstream
Tssr65725	transcription start site region 65725	77 bp downstream
Tssr65726	transcription start site region 65726	72 bp downstream
Tssr65727	transcription start site region 65727	38 bp downstream
Tssr65728	transcription start site region 65728	238 bp upstream
Tssr65729	transcription start site region 65729	556 bp upstream
Tssr65730	transcription start site region 65730	604 bp upstream
Tssr65731	transcription start site region 65731	630 bp upstream
Tssr65732	transcription start site region 65732	668 bp upstream
Tssr65733	transcription start site region 65733	696 bp upstream
Tssr65734	transcription start site region 65734	737 bp upstream
Tssr65735	transcription start site region 65735	1536 bp upstream
Tssr65736	transcription start site region 65736	1555 bp upstream
Tssr65737	transcription start site region 65737	1589 bp upstream
Tssr65738	transcription start site region 65738	1645 bp upstream
Tssr65739	transcription start site region 65739	1841 bp upstream
Tssr65740	transcription start site region 65740	1868 bp upstream
Tssr71746	transcription start site region 71746	1715 bp downstream