rs3147847 SNP Detail

Summary

• ID
  rs3147847
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122007 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCAA ACTTGGGAAT AGCAGGGACC
  M
  ACCATCCCGG AGATGCCCCT GTATC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758641	IKBns_JC7173_12	ROCHEBIO	RPAMM	r	SNP	G		G	G	G	T	G	G	T	T	G			G	G	G		G
ss148677538	ENSMUSSNP5407770	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		G								G
ss322134121	CHEV_7_31207601	CHEVERUD	SCREENING_POP	r	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs3147847					SNP	C	C	C	C	C	A	C	C	A	A	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122007 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	512 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	728 bp downstream
Rr400240	regulatory region 400240	149 bp downstream
Rr644814	regulatory region 644814	840 bp distal
Rr644815	regulatory region 644815	166 bp distal
Rr644816	regulatory region 644816	203 bp proximal
Tssr2184	transcription start site region 2184	762 bp upstream
Tssr65714	transcription start site region 65714	840 bp downstream
Tssr65715	transcription start site region 65715	287 bp downstream
Tssr65716	transcription start site region 65716	151 bp downstream
Tssr65717	transcription start site region 65717	138 bp downstream
Tssr65718	transcription start site region 65718	112 bp downstream
Tssr65719	transcription start site region 65719	684 bp upstream
Tssr65720	transcription start site region 65720	723 bp upstream
Tssr65721	transcription start site region 65721	780 bp upstream
Tssr65722	transcription start site region 65722	799 bp upstream
Tssr65723	transcription start site region 65723	830 bp upstream
Tssr65724	transcription start site region 65724	846 bp upstream
Tssr65725	transcription start site region 65725	1018 bp upstream
Tssr65726	transcription start site region 65726	1025 bp upstream
Tssr65727	transcription start site region 65727	1043 bp upstream
Tssr65728	transcription start site region 65728	1338 bp upstream
Tssr65729	transcription start site region 65729	1656 bp upstream
Tssr65730	transcription start site region 65730	1704 bp upstream
Tssr65731	transcription start site region 65731	1730 bp upstream
Tssr65732	transcription start site region 65732	1768 bp upstream
Tssr65733	transcription start site region 65733	1796 bp upstream
Tssr65734	transcription start site region 65734	1837 bp upstream
Tssr71745	transcription start site region 71745	946 bp upstream