rs31478645 SNP Detail

Summary

• ID
  rs31478645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90602104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT TCTTCTTCTT CTTCTTCTTC
  Y
  TCTTCTTCTT CATCTATCTA TCTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45537938	mCV24983538	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31478645					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90602104 () rs orientation: forward

Symbol	Name	Function Class
S100a9	S100 calcium binding protein A9 (calgranulin B)	within coordinates
Tssr950	transcription start site region 950	1876 bp upstream
Tssr951	transcription start site region 951	586 bp upstream
Tssr952	transcription start site region 952	325 bp upstream
Tssr953	transcription start site region 953	371 bp downstream
Tssr954	transcription start site region 954	1196 bp upstream
Tssr30270	transcription start site region 30270	1900 bp downstream
Tssr30271	transcription start site region 30271	1237 bp upstream
Tssr34253	transcription start site region 34253	1932 bp upstream
Tssr34254	transcription start site region 34254	157 bp downstream
Tssr34255	transcription start site region 34255	252 bp downstream
Tssr34256	transcription start site region 34256	327 bp downstream
Tssr34257	transcription start site region 34257	387 bp downstream
Tssr34258	transcription start site region 34258	448 bp downstream
Tssr34259	transcription start site region 34259	575 bp downstream
Tssr34260	transcription start site region 34260	887 bp downstream
Tssr34261	transcription start site region 34261	909 bp downstream
Tssr34262	transcription start site region 34262	959 bp downstream
Tssr34263	transcription start site region 34263	991 bp downstream