rs31479285 SNP Detail

Summary

• ID
  rs31479285
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCTGAG TACCACGGGC
  AAAGGCTAAA GGCAGGCCTG TTCCTCTGGA CAAGCCTGCA TGAAGTGTCA TGGTTCCTAA
  CACTCTGAGT GAAGCTCTCA GGAAAGGCTC TGCCTCACTC AGCCCAGAGA GGATGAGACC
  CAGGCAGTAC GGTCCCTGCT CCACGTTTCC AGTGCTCTGC TCTCCGGCCT CTTCCTGAAG
  M
  AGCCTGGCTT GAGGAGGTAG CAGCCACACC TGGTTATAGC AGCAGATCTA CCAACAGGCC
  TCACCAGACA TCTCCAGAGG CCACAGGCAG TTCTAAGTTA TTACAAATAG CCTGGCCATG
  GCATAAATGA ATGCTGTTTG TGCCAGCCAG GGTGGTGCAC ATCTGGGGTT CCAACACCCA
  CAAGGCCGAG GGAAAAGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45538387	mCV24027934	ABI	CRAMUS_MOUSE	f	SNP		A	C					A		A
ss51060148	NES13425297	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	C		A	A	A	A	C	A	A	C	A
ss136101744	ENSMUSSNP1801977	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31479285					SNP	A	A	C	A	C	A	C	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060148	NES13425297	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994115 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587515	regulatory region 587515	424 bp distal
Rr587516	regulatory region 587516	364 bp proximal
Tssr32405	transcription start site region 32405	1848 bp upstream