rs31479916 SNP Detail

Summary

• ID
  rs31479916
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188118452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCTTTTC TCAAGTGAGT ATTTTCAACA GCTGAACAAG
  ACAACAGCAC AGACACAAAA TACTTGAGTG GAAACAAGTG TTCTGTTGTA TGTTCTTAAC
  K
  GGCGTTTTCC CATGACATCT GTATGTAGCA GAAACTGCAT ACCTGTATTT ATTTTGAAAT
  CAAATGAGTA CCTTAAGCAG GTGGCTTGTT GTACAAATG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45038068	mCV22305165	ABI	CRAMUS_MOUSE	f	SNP		G					G	T
ss60358717	NES15859043	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	G	G		T	G	T		T	T		G
ss146473674	ENSMUSSNP6110689	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						T
ss320187878	CHEV_1_190210134	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31479916					SNP	T	G	T	G	G	G	G	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60358717	NES15859043	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188118452 () rs orientation: forward

Symbol	Name	Function Class
Rr425688	regulatory region 425688	673 bp distal
Rr425689	regulatory region 425689	1389 bp distal
Rr425690	regulatory region 425690	1146 bp distal
Rr425691	regulatory region 425691	987 bp distal
Rr425692	regulatory region 425692	897 bp distal
Rr425693	regulatory region 425693	805 bp distal
Rr425694	regulatory region 425694	79 bp distal
Rr425695	regulatory region 425695	1116 bp proximal
Rr425696	regulatory region 425696	1547 bp proximal
Ush2a	usherin	Intron