rs31479919 SNP Detail

Summary

• ID
  rs31479919
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170978966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA ACCCGCTTTG ATTTATATAT
  W
  CTGTATATCC ACGGTTTTGA GGATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45038072	mCV24422410	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss119995574	PARCsnp_1.11864	PARC_SEQ	INBRED	f	SNP			A	T
ss119997119	PARCsnp_1.00828	PARC_SEQ	INBRED	f	SNP			A	T
ss146155024	ENSMUSSNP123449	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320116728	CHEV_1_173081528	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31479919					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170978966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	637 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	445 bp downstream
Rr423226	regulatory region 423226	817 bp distal
Rr423227	regulatory region 423227	674 bp distal
Rr423228	regulatory region 423228	within coordinates
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	757 bp upstream
Tssr14985	transcription start site region 14985	788 bp upstream