rs31480048 SNP Detail

Summary

• ID
  rs31480048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:67551018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCGGTGC GAGTGATTTC
  CAATGGGACC AAGTCATCCT ACAACACGCT GAGGCACCTC TGGCCACTTG TCCTGGTGCC
  ACTGTACAGA GCGACCCAGG TTTTTGAATG GGTATCGCTA GCAGATGTAC TTTTGTTGCA
  ATTTGGGGAA TGGTGATTCA ACAAGAAGAA CACAGCCCTT GCAGTCAGCT ATGAAGCTTA
  R
  AATCAAAAAT TTTTGGTAAT CTAGTGCCTT CAGTAGTCAA ACTGACAAGG CCAGTAATTT
  AGTGTGGGAA TTCCAGTTCT CCCAGTATTT CCTAAAATCC AATATAGTGT GGGGAATGCA
  AGTGGCCTCT AATTCGATGG CGTATTCCTT TTGCCCTCCA CATTGCCAAT GTTAGTTCTT
  CCTTCTCCAT TTTGTGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46572734	NES10445837	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31480048					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572734	NES10445837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67551018 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	mRNA-UTR
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	157 bp proximal
Rr612661	regulatory region 612661	266 bp proximal
Rr612662	regulatory region 612662	1134 bp proximal
Tssr51234	transcription start site region 51234	680 bp downstream