rs31480049 SNP Detail

Summary

• ID
  rs31480049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67551160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGAATG GTGATTCAAC
  AAGAAGAACA CAGCCCTTGC AGTCAGCTAT GAAGCTTAGA ATCAAAAATT TTTGGTAATC
  TAGTGCCTTC AGTAGTCAAA CTGACAAGGC CAGTAATTTA GTGTGGGAAT TCCAGTTCTC
  CCAGTATTTC CTAAAATCCA ATATAGTGTG GGGAATGCAA GTGGCCTCTA ATTCGATGGC
  R
  TATTCCTTTT GCCCTCCACA TTGCCAATGT TAGTTCTTCC TTCTCCATTT TGTGTGCACG
  CGCGCGCGCA CACACACACA CACACACACA CACACACACA CACACACACA CAAACACAAA
  CACACACAGA AGCCCCTGGC TGATAATGCG AGTAGCTTTG CCATCAGTTA AGTGACATTT
  CCCTCCAATG TTTCAAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46572735	NES10445838	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31480049					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572735	NES10445838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67551160 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	within coordinates
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	15 bp proximal
Rr612661	regulatory region 612661	124 bp proximal
Rr612662	regulatory region 612662	992 bp proximal
Tssr46579	transcription start site region 46579	1889 bp upstream
Tssr51234	transcription start site region 51234	538 bp downstream