rs31480659 SNP Detail

Summary

• ID
  rs31480659
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146205178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCCTTC TGAAAACCCC
  TCTGGGGTTC ATCAGTTACA AGCACGAAGT CAGCAATTAC AGGGACATCA AAAGAGCAAA
  CGATCCCCGA ACGCGAACGC TTTATTTTTT AAAAAAGCAC GGGGGACAGA TTCCAGAAAG
  ACAGGGCTAA CAGGAAGCTG TGCGGGGCGG CTCGCACCTC TCGGCGACAG GCCAGCCTCC
  S
  ACCGTCCAGG GTCCCGCGGC CCGGGTCCGT TACGGCGCCC TGGGCCCCGG GCTGGGCGAG
  CTGCGGCCGG CGCCGCCGGT TCACCCGAGG GCGCCTCACA CAGGGCTGAG CTGGCGGGAC
  TTGGGACGTG TCACGGACGC CCCGAGGCAG CGCGGCCACG TCCCTCACCC CGCCGTCGGT
  CGCGGACCTC CCTCCCCGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45538603	mCV25041058	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss321010538	CHEV_3_146162387	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31480659					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146205178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13920	CpG island 13920	within coordinates
Gng5	G protein subunit gamma 5	413 bp upstream
Rr77342	regulatory region 77342	within coordinates
Rr398118	regulatory region 398118	969 bp upstream
Spata1	spermatogenesis associated 1	within coordinates
Tssr32351	transcription start site region 32351	282 bp upstream
Tssr32352	transcription start site region 32352	405 bp upstream
Tssr32353	transcription start site region 32353	427 bp upstream
Tssr32354	transcription start site region 32354	648 bp upstream
Tssr32355	transcription start site region 32355	708 bp upstream
Tssr32356	transcription start site region 32356	738 bp upstream
Tssr32357	transcription start site region 32357	766 bp upstream
Tssr36036	transcription start site region 36036	298 bp downstream
Tssr36037	transcription start site region 36037	384 bp downstream
Tssr36038	transcription start site region 36038	665 bp downstream