rs31481231 SNP Detail

Summary

• ID
  rs31481231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:67552697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAC ATTTTCCTCA CCAATGACAG
  R
  GCACAGCTGC ATCCTGAGAT ATTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46572747	NES10445719	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A	G	A	G	A		A	A	A	G		A
ss148601382	ENSMUSSNP4639886	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321565128	CHEV_5_67786593	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31481231					SNP	A	A	A	A	G	A	A	G	A	G	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572747	NES10445719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67552697 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	mRNA-UTR
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	1376 bp distal
Rr612661	regulatory region 612661	870 bp distal
Rr612662	regulatory region 612662	within coordinates
Rr612663	regulatory region 612663	1876 bp proximal
Tssr46579	transcription start site region 46579	352 bp upstream
Tssr51234	transcription start site region 51234	995 bp upstream