rs31481543 SNP Detail

Summary

• ID
  rs31481543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127684599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATCCCAA AAGTCCCCCA
  TACCCTCCCC CCCACTTCCC TACCCACCCA TTCCCATTTT TTTGGCCCTG GCATTCCCCT
  GTACTGGGGC ATATAAAGTT TGCGTGTCCA ATGGGCCTCT CTTTCCACTG ACATTTTAAG
  GCAGATAATA CTTTGCTGTG GTATTGGTTC CCTTCTATCA CTTTGACCAA AGTCCTTGAT
  R
  TAAACACCTT AAAGGACAAG GGTTCATTTT GGCTCACTGG TTGGGATTTA GGATGCAGAG
  GGCATGGGAG AGAAGTTTAC ATCAGGCAGC CAGAGCAGAC AAAAGAGGCC TCTAGGAAGG
  GGTTTTCCTC AGCTCCCAGT GTTATCACAT TATGAATCCA TCTGGGTGAG AGCTTTATGA
  TCTACCTCTA ACCTTCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45538818	mCV23455656	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss135874319	ENSMUSSNP5573582	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320957937	CHEV_3_127593868	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31481543					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127684599 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	1026 bp distal
Rr584893	regulatory region 584893	629 bp distal
Rr584894	regulatory region 584894	within coordinates