rs31481738 SNP Detail

Summary

• ID
  rs31481738
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:24470777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACTGA GGAGAGAGGG
  GCAGAGACCG GAGAATTTCT GGGGCTCTTT AGCTAGACAA CCTAGTTGAA TAATAGCAAG
  TTTCAAGTTC AGTGACAGAC TCTGTCTCAA AAAATGTGAT GGAGGGTAAA GACATCTCCT
  ATGTGCACTC ACTGGTGAGC ACACCCACAT ATATGCATCA CACACATGCC ACACATGCAC
  W
  TAGCCTTATT CTACCAGGCA TTTTGCCCAG CACAGGGGCA CAAGGCTGTA ATCCCAGAAG
  TGTTTAGAGG GCCGAGGCAT GAGAGGCCAG CTTGCTCTGG TGAGTTCTCA GCCAGGCCCT
  CAGCAAGGCC CTCAGTCAGG CAGGCAGGCA GGCAGGCAGG CAGGCAGGCA GGCAGGCAGG
  AAGACAGACA GGCAGACAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49244414	NES12669381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31481738					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49244414	NES12669381	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:24470777 () rs orientation: forward

Symbol	Name	Function Class
Gm38410	predicted gene, 38410	1646 bp upstream