rs31481742 SNP Detail

Summary

• ID
  rs31481742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:24470487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCATGTT ATGACCCTGG
  AAATAAAAGA CAACCATTGC TCCAAGAACC AAAGGGCATC ATCAAAAGCT CTGCTAATTG
  TTGACTTGAG CTATCCTGTG CTTATGTTTG GAAGCAACCA CATGCTCCCT GCTAGTACGG
  TTTCATCAGA TGCCCGTTAA AAGAAAAATC TGGGGTAGAT AACAAGTGTA CTGGATAAGA
  R
  AAGTTAGGGC ACAAACATGA GGATCTCTGT TTTATATGGG TCCTTAGAAG CCATATACAA
  CCCTGGTGTG GTTGCCCCAT CCTGTGACCC CAGCACTGAG GAGAGAGGGG CAGAGACCGG
  AGAATTTCTG GGGCTCTTTA GCTAGACAAC CTAGTTGAAT AATAGCAAGT TTCAAGTTCA
  GTGACAGACT CTGTCTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49244418	NES12669377	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31481742					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49244418	NES12669377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:24470487 () rs orientation: forward

Symbol	Name	Function Class
Gm38410	predicted gene, 38410	1936 bp upstream
Rr534936	regulatory region 534936	1969 bp distal