rs31481903 SNP Detail

Summary

• ID
  rs31481903
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123062437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAGTTCG AGGCTAGCCT GGTCTACAGA GTAAGTTCAG
  GACAGCAAGG ACTACAAGGG AAACCTTGTC TCTGCAGAAA CCAACCAACC AAATAAACAA
  M
  AGTATCTTTT AAAAACCTCT CTAGGAGATA TCTGTTTTAG CAAAACATGG AAACATAAAG
  TGTAAAGCTA ATTGGCATTT GGGCTCTGAA TAGAGTCAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45538523	mCV25366957	ABI	CRAMUS_MOUSE	f	SNP	A		C	A	C
ss135761743	ENSMUSSNP3286511	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
ss320918513	CHEV_3_122971706	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31481903					SNP	A	A	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123062437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	576 bp distal
Gm56815	predicted gene, 56815	1434 bp downstream
Gm66521	predicted gene, 66521	1371 bp upstream
Rr77168	regulatory region 77168	within coordinates
Sec24d	SEC24 homolog D, COPII coat complex component	within coordinates
Tssr31542	transcription start site region 31542	1586 bp downstream
Tssr31543	transcription start site region 31543	1567 bp downstream
Tssr31544	transcription start site region 31544	1288 bp downstream
Tssr31545	transcription start site region 31545	904 bp upstream